Bologna seems to be more food and church filled than anything
Food, yes. Churches, not so much.
And certainly not compared to Rome.
I think Bologna gets its reputation as a foodie haven because it's still more of a business destination and so good food is easy to find even close to its few "sights."
Good thing that day trip opportunities from Bologna have been mentioned.
After two days, you'll want to look into them.
Personally, I'd stay in Ravenna (smaller, cheaper, more things to see, comparable high quality of food and atmosphere) and day-trip into Bologna.
the anatomy museum at the university is a must do
I wonder where that would fall on the list of "must-do's" if it were in Rome.
Mind you, I don't dislike Bologna.
But you may be hard-pressed to keep yourself occupied in the evenings.