We'll be arriving to Kyoto on 20th Nov 2017 evening and will leave on 26th Nov morning.
Autumn foliage + public holiday (Nov 23) means that Kyoto will be packed. I hope you have booked accommodation. Avoid some of the most popular/famous foliage spots unless you enjoy crowds. There are plenty of pretty less visited temples in Kyoto even that time of the year. Regarding crowds I have particularly bad memories about Tofukuji that time of the year.
Day 2
Kiyomizu Temple
The main hall (which IMO is by far the best there is) is under scaffolding, and you might want to drop it (though in a recent thread here, somebody still liked it with scaffolding).
Jishu Shrine
This would be on the Kiyomizudera grounds. Just a regular small shrine to me. Worth a stop if you go to Kiyomizudera, but otherwise not.
Sanneizaka and Ninenzaka Streets
ok, somewhat touristic, but still a nice neighborhood. I much prefer it int he morning or evening when it gets less crowded.
Yasaka Shrine and Pagoda
Which pagoda? Yasaka Shrine is IMO much better in the evening lit up. Could combine it with "geisha"-spotting in nearby Ghion.
Chion-in Temple
IMO there are many similar temples to this one in Kyoto, and since its main hall is under scaffolding I'd skip it. You can still see the main gate (sanmon) which is at the lower end near the main path (if you walk Ginkaku-ji to Kiyomizudera).
Shoren - in Temple
ok, but there are plenty similar temples. Generally I'd make sure to see different types of temples.
Nishiki Market f
Not too thrilled about this one, but people seem to like it. You can see similar markets in other cities in Japan in case you are pressed for time in Kyoto.
Fushimi Inari Shrine
Iconic shrine and I would not miss it. It opens 24 h and the main lower part of the shrine/torii is lit up at night. Could see it in the early morning or evening when other sights are closed in order to gain extra sightseeing time.
Tofukuji Temple (?)
A good one, but as above in autumn season I would not recommend it.
Dinner and visit Gion District
As above, see Yasaka shrine here.
Day 4
Tenryu-ji Temple
Arashiyama
Bamboo forest
Okochi-Sanso Villa
ok. Some good/different ones if you continue walking further north: Gioji and Otagi-Nenbutsuji.
Kinkaku -Ji Temple
Koto-in Temple
I like this and other sub-temples of Daitokuji a lot. For logistics, I'd check whether it makes sense to start with Koto-in/Kinkaku-ji in the morning since you will then know how much time you have left for Arashiyama.
Day 6
Ryoan-ji Temple (?)
It would make sense to combine this with Kinkakuji. It is probably the most famous rock garden (and therefore crowded). I'd make sure to see at least one such rock garden, but unless you are decided on this one, there are many others, for instance, for instance in Daitoku-in
Ginkaku-ji Temple
Honen-in Temple
Philosopher's path
Eikando-Temple
Nanzen-ji Temple
Shugaku-in villa (?)
A good one, but you can only visit on a tour and if you get a tour around noon that is quite inconvenient for most sightseeing plans. If you go here, I'd consider a different itinerary, taking in Manshu-in, Enko-ji which are both great in autumn and should be considerably less crowded due to their somewhat remote location. Could end the day in Ohara if you have the time.
Shopping at Shijo-Dori
Day 7
Leaving Kyoto
Thank you in advance for all the help.